BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005B09SP1|AL425336
(543 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 622 e-178
>3x_Contig1780
Length = 27883
Score = 622 bits (309), Expect = e-178
Identities = 354/371 (95%)
Strand = Plus / Minus
Query: 1 agtcgatctacaatcgtctcagggtagaataacaaaaagtagaacgtcgcactacattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23473 agtcgatctacaatcgtctcagggtagaataacaaaaagtagaacgtcgcactacattac 23414
Query: 61 actttaacggctaaacgttttgttacgtttgagtcattcagctggtctgtcccaattttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23413 actttaacggctaaacgttttgttacgtttgagtcattcagctggtctgtcccaattttt 23354
Query: 121 tattcgttttctcttatcttccctcaattctcaatacattgtggctttagttgtgaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23353 tattcgttttctcttatcttccctcaattctcaatacattgtggctttagttgtgaaata 23294
Query: 181 gaattatctgcccttctacaatactcctttgatattctctttgttcaaaataaagttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23293 gaattatctgcccttctacaatactcctttgatattctctttgttcaaaataaagttcac 23234
Query: 241 ttaaacaaatacaatctatttttatttatmcctgatgtccaatctgaccatggtagattc 300
||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 23233 ttaaacaaatacaatctatttttatttatacatgatgtcaaatctgaccatggtagattc 23174
Query: 301 ccactatatgasttgcctaagasggtcgctttggsatgagccagcttctcatcccmmttt 360
||||||||| |||| ||||| ||||| ||||| ||||| ||||||| |||| |||
Sbjct: 23173 aaactatatgaattgcataagaaggtcgatttggaatgagaaagcttctaatccaaattt 23114
Query: 361 gcttgagatgg 371
| |||||||||
Sbjct: 23113 gattgagatgg 23103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.714 1.32
Gapped
Lambda K H
1.39 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3004
Number of Sequences: 1807
Number of extensions: 3004
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 543
length of database: 10,358,551
effective HSP length: 16
effective length of query: 527
effective length of database: 10,329,639
effective search space: 5443719753
effective search space used: 5443719753
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 49 (99.1 bits)